Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3409

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11776 and 11777 are separated by 339 nucleotides11777 and 11778 are separated by 540 nucleotides mRNA_3408: 11776 - K00012 UGDH, ugd UDPglucose 6-dehydrogenase, at 18,200 to 20,454 11776 mRNA_3409: 11777 - K05658 ABCB1, CD243 ATP-binding cassette, subfamily B (MDR/TAP), member 1, at 20,794 to 26,649 11777 mRNA_3410: 11778 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 27,190 to 28,187 11778

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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20,780 + -0.3
20,827 - -0.8
20,867 + -0.7
20,938 - +0.1
21,514 - 11777 mRNA_3409 0.12 -0.1
21,825 + 11777 mRNA_3409 0.18 -0.5
21,826 + 11777 mRNA_3409 0.18 +0.9
21,927 + 11777 mRNA_3409 0.19 +1.0
21,952 + 11777 mRNA_3409 0.20 -0.1
21,956 + 11777 mRNA_3409 0.20 -0.5
22,176 + 11777 mRNA_3409 0.24 -0.8
22,259 - 11777 mRNA_3409 0.25 +0.3
22,406 - 11777 mRNA_3409 0.28 +1.7
22,540 + 11777 mRNA_3409 0.30 +0.1
22,585 - 11777 mRNA_3409 0.31 +0.2
22,681 - 11777 mRNA_3409 0.32 +0.4
23,218 + 11777 mRNA_3409 0.41 +0.7
23,523 + 11777 mRNA_3409 0.47 +0.3
23,688 + 11777 mRNA_3409 0.49 +0.6
23,858 - 11777 mRNA_3409 0.52 -0.7
24,136 - 11777 mRNA_3409 0.57 -0.2
24,233 + 11777 mRNA_3409 0.59 -0.1
24,554 + 11777 mRNA_3409 0.64 +1.2
24,862 - 11777 mRNA_3409 0.69 -1.8
25,281 - 11777 mRNA_3409 0.77 +0.7
25,657 + 11777 mRNA_3409 0.83 +1.0
25,946 + 11777 mRNA_3409 0.88 -0.5
26,269 + +0.2
26,289 + +0.7
26,293 + +0.6
26,306 + +0.2
26,435 - -0.1
26,460 + +0.2
26,543 + +0.3
26,559 - +0.4
26,572 + -0.3
26,589 - +1.0
26,590 + +0.0
26,596 + +0.8
26,602 + +0.1
26,621 - -0.4
26,640 - +2.2
26,645 + +2.5
26,647 - -0.3
26,654 + -0.5
26,654 - +0.1
26,666 - -0.4
26,915 + +0.4
26,941 - -0.2
26,942 - -0.3
26,947 + -0.2
26,957 + -0.5
27,048 + +0.1
27,130 + -0.2
27,371 + 11778 mRNA_3410 0.18 +0.1
27,378 + 11778 mRNA_3410 0.19 +1.0
27,394 - 11778 mRNA_3410 0.20 +1.7
27,403 + 11778 mRNA_3410 0.21 +1.5
27,518 - 11778 mRNA_3410 0.33 +0.6
27,574 - 11778 mRNA_3410 0.38 +2.9

Or see this region's nucleotide sequence