Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3419

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11787 and 11788 are separated by 390 nucleotides mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50,010 to 53,314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53,705 to 57,912 11788

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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49,097 - +0.4
49,103 + -1.9
49,180 + -1.5
49,194 - -0.1
49,195 + +1.5
49,214 + +0.8
49,325 - -1.7
49,349 - +1.6
49,371 + -1.2
49,372 + -0.1
49,376 - +1.6
49,376 - +0.0
49,378 - +0.1
49,378 - -0.8
49,379 - +0.8
49,384 + -0.6
49,387 + -0.6
49,393 - +0.4
49,396 - +0.3
49,398 + -1.0
49,400 + +0.1
49,402 + -1.3
49,406 + +0.4
49,407 + +0.6
49,409 + +0.6
49,409 + +0.5
49,420 - +0.7
49,472 - -0.0
49,496 - -0.2
49,503 - +0.5
49,505 + +0.2
49,505 + +0.7
49,508 - -0.2
49,524 + +0.3
49,527 + +0.3
49,532 - +1.4
49,534 - +0.1
49,574 + -0.4
49,582 + -1.2
49,605 + -2.3
49,610 + +0.9
49,626 - +1.6
49,626 - -0.3
49,627 - -0.0
49,627 - -0.5
49,629 + -0.5
49,638 - +0.3
49,644 + +1.1
49,663 + -0.2
49,736 - +1.0
49,754 - +0.7
49,766 - +0.7
49,776 + -0.4
49,777 - +1.1
49,784 - -1.0
49,803 - +0.3
49,926 + +0.6
49,933 + -0.2
49,935 - +0.3
49,943 + +1.4
50,075 - +0.5
50,081 - +1.2
50,084 + -0.6
50,089 + -0.4
50,116 + -0.1
50,240 + -1.0
50,240 - +0.2
50,241 + +0.3
50,247 + -1.0
50,269 - -0.6
50,273 - +1.4
50,417 + 11787 mRNA_3419 0.12 -2.2
50,555 + 11787 mRNA_3419 0.16 -0.4
50,701 + 11787 mRNA_3419 0.21 -1.2
50,973 + 11787 mRNA_3419 0.29 -3.5
50,982 - 11787 mRNA_3419 0.29 -0.0
51,462 - 11787 mRNA_3419 0.44 +0.5
52,264 - 11787 mRNA_3419 0.68 -1.7
52,421 - 11787 mRNA_3419 0.73 -1.0
52,581 - 11787 mRNA_3419 0.78 +0.7
52,610 - 11787 mRNA_3419 0.79 -0.2
52,981 - 11787 mRNA_3419 0.90 -0.0
53,417 - +0.1
53,602 - -0.2
53,604 - +0.4
53,609 + +0.0
53,615 - +1.4
53,615 - +0.6
53,616 - +2.0
53,624 + -0.7

Or see this region's nucleotide sequence