Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3426

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11793 and 11794 are separated by 79 nucleotides11794 and 11795 are separated by 268 nucleotides mRNA_3425: 11793 - K00789 metK S-adenosylmethionine synthetase, at 67,905 to 69,207 11793 mRNA_3426: 11794 - K08498 STX6 syntaxin 6, at 69,287 to 70,405 11794 mRNA_3427: 11795 - HMMPfam-Domain of unknown function (DUF1996)-PF09362, at 70,674 to 72,222 11795

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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68,610 + 11793 mRNA_3425 0.54 +0.1
68,785 + 11793 mRNA_3425 0.68 -0.5
68,918 + 11793 mRNA_3425 0.78 -0.6
68,932 + 11793 mRNA_3425 0.79 +0.4
68,942 - 11793 mRNA_3425 0.80 +0.4
68,969 - 11793 mRNA_3425 0.82 +0.0
69,111 + +0.1
69,117 + -2.1
69,130 - +1.2
69,134 + +0.4
69,153 + -0.0
69,254 + -0.1
69,257 + +0.9
69,423 - 11794 mRNA_3426 0.12 +2.8
69,569 - 11794 mRNA_3426 0.25 -0.8
69,581 - 11794 mRNA_3426 0.26 -2.7
69,728 + 11794 mRNA_3426 0.39 +0.6
69,813 - 11794 mRNA_3426 0.47 -0.1
69,820 + 11794 mRNA_3426 0.48 -0.2
69,867 + 11794 mRNA_3426 0.52 +0.3
69,896 - 11794 mRNA_3426 0.54 +0.7
69,896 - 11794 mRNA_3426 0.54 +1.2
69,909 + 11794 mRNA_3426 0.56 +1.0
70,282 - 11794 mRNA_3426 0.89 +0.5
70,459 - -0.8
70,576 + +1.5
70,854 - 11795 mRNA_3427 0.12 +0.6
70,870 + 11795 mRNA_3427 0.13 -0.5
70,911 - 11795 mRNA_3427 0.15 -0.2
71,324 + 11795 mRNA_3427 0.42 +2.6
71,329 - 11795 mRNA_3427 0.42 -0.6

Or see this region's nucleotide sequence