Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3622

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11989 and 11990 are separated by 534 nucleotides mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381 11990

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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185,231 - 11989 mRNA_3621 0.89 -0.1
185,249 + 11989 mRNA_3621 0.90 -0.7
185,400 + +0.4
185,410 + +0.5
185,523 - +0.7
185,533 - +0.5
185,533 - +1.4
185,548 - +0.1
185,548 - -0.3
185,549 - -0.4
185,553 + -0.0
185,560 + +0.9
185,564 + +0.0
185,565 - -0.8
185,567 - +1.1
185,568 + +0.1
185,570 - -0.5
185,578 + -1.1
185,578 + +0.2
185,593 - +0.3
185,593 - +0.3
185,593 - -0.2
185,594 + +0.2
185,596 + +0.5
185,601 + -0.6
185,649 - +0.5
185,661 - -0.2
185,661 - -0.6
185,662 + +0.4
185,662 + +1.3
185,666 + +1.4
185,673 - -0.9
185,677 - -1.3
185,679 + +1.1
185,696 + +0.5
185,704 + -0.3
185,712 - -0.7
185,713 + -0.5
185,727 + +0.8
185,744 - +3.0
185,763 + +0.4
185,786 - +0.6
185,816 + -1.9
185,830 + -0.7
185,833 - -0.6
185,852 - +0.1
185,855 + +0.6
185,877 + -0.2
185,885 + +0.2
185,888 + +0.5
185,888 + -0.2
185,912 - +0.6
185,920 + +0.2
185,948 + +0.3
185,963 - +0.6
185,978 - -2.4
185,979 + -0.1
185,989 + -1.5
186,026 + -0.5
186,029 + -0.7
186,122 + +0.3
186,164 - +0.7
186,196 + +0.2
186,301 - 11990 mRNA_3622 0.12 +0.2
186,328 - 11990 mRNA_3622 0.13 -0.7
186,349 - 11990 mRNA_3622 0.14 +0.7
186,378 - 11990 mRNA_3622 0.15 -0.8
186,538 + 11990 mRNA_3622 0.22 +0.0
186,540 + 11990 mRNA_3622 0.22 +0.4
186,573 - 11990 mRNA_3622 0.23 -1.5
186,579 - 11990 mRNA_3622 0.24 +1.2
186,599 + 11990 mRNA_3622 0.25 -0.2
186,622 - 11990 mRNA_3622 0.26 +0.1
186,645 - 11990 mRNA_3622 0.27 -0.0
186,776 + 11990 mRNA_3622 0.32 -0.4
186,789 + 11990 mRNA_3622 0.33 -0.5
186,809 - 11990 mRNA_3622 0.33 -0.2
186,843 + 11990 mRNA_3622 0.35 +0.7
186,861 + 11990 mRNA_3622 0.36 +0.4
186,967 + 11990 mRNA_3622 0.40 +0.9
187,087 + 11990 mRNA_3622 0.45 +0.4
187,242 + 11990 mRNA_3622 0.52 +1.3
187,254 + 11990 mRNA_3622 0.52 -0.2
187,358 + 11990 mRNA_3622 0.57 -0.1
187,371 + 11990 mRNA_3622 0.57 -0.5
187,614 - 11990 mRNA_3622 0.68 +1.1
187,650 + 11990 mRNA_3622 0.69 +0.2
187,773 + 11990 mRNA_3622 0.74 -0.1
187,802 - 11990 mRNA_3622 0.75 +1.7
187,806 - 11990 mRNA_3622 0.76 +0.7
187,845 + 11990 mRNA_3622 0.77 +1.4
187,908 - 11990 mRNA_3622 0.80 +0.7
187,911 + 11990 mRNA_3622 0.80 -0.7
188,228 - -0.5
188,425 + +0.3
188,463 + -0.0
188,486 - +0.6
188,500 + +0.6
188,508 - +0.5
188,523 + -0.2
188,546 + +0.8
188,548 + +0.2
188,549 - -1.0
188,552 + -0.2
188,553 + +0.1
188,556 - +0.2
188,557 + +2.3
188,559 - +0.8
188,570 - +0.8
188,570 - +0.2
188,572 + +1.0
188,576 - +0.9
188,591 + -0.4
188,592 - +0.0
188,593 + -0.2
188,605 + +1.3
188,612 + +0.9
188,704 - -0.8
188,705 - +0.6
188,708 - -1.3
188,709 + -0.7
188,717 + +0.9
188,718 - -1.4
188,721 + +0.1
188,721 + -0.9
188,724 - +0.6
188,725 - -2.3
188,725 - -0.1
188,730 - -0.1
188,731 + +2.3
188,732 + +0.9
188,738 + +0.8
188,749 - -1.1
188,753 + +0.6
188,782 - -1.0
188,782 - +2.0
188,784 - +0.7
188,786 + +0.9
188,791 - +1.3
188,791 + -0.0
188,803 - -0.7
188,805 - +0.1
188,809 - -0.3
188,814 - -0.6
188,815 - +0.5
188,815 - -0.9
188,816 - +0.5
188,816 - +0.6
188,816 + +0.0
188,824 + -0.0
188,831 - +1.8
188,833 + +0.2
188,836 + +1.9
188,837 - -0.2
188,841 + -0.1
188,841 - +0.4
188,844 + +0.3
188,846 + -0.1
188,862 - +0.2
188,864 + +1.2
188,872 + +1.2
188,875 - +0.5
188,876 + +0.4
188,878 + +1.9
188,887 - +1.9
188,896 - +1.1
188,896 - -1.2
188,897 - +0.5
188,903 + +0.9
188,903 + +2.7
188,906 + +1.2
188,907 + +0.2
188,908 - +0.2
188,914 + -0.4
188,921 - +0.3
188,922 - +0.6
188,934 - +1.6
188,936 - +2.0
188,936 - -0.2
188,942 - -0.1
188,943 - +0.4
188,951 - +0.6
188,962 - +1.4
189,019 + -1.0
189,075 - -0.7
189,080 - -1.2
189,082 - +0.8
189,082 + +0.8
189,100 - -2.9
189,102 + -0.6
189,106 - +0.8
189,119 + -0.3
189,119 + +1.6
189,119 - +0.1
189,124 - +0.3
189,125 + -0.2
189,125 + -0.3
189,127 + -0.8
189,132 + -0.5
189,134 + +0.3
189,158 - -0.7
189,171 + +2.1
189,171 - +1.0
189,184 - -0.5
189,186 - +1.8
189,186 - -0.1
189,187 + +0.8
189,189 + +1.3
189,190 + -0.2
189,221 + +1.9
189,222 - +0.3
189,223 + +0.2
189,232 + -3.0
189,252 - +1.5
189,260 - -0.3
189,272 - -0.4
189,292 - -0.9
189,296 - -0.0
189,304 - +0.6
189,371 + -0.3

Or see this region's nucleotide sequence