Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3719

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12086 and 12087 are separated by 652 nucleotides12087 and 12088 are separated by 267 nucleotides mRNA_3718: 12086 - K00249 ACADM, acd acyl-CoA dehydrogenase, at 421,354 to 423,944 12086 mRNA_3719: 12087 - K04043 dnaK molecular chaperone DnaK, at 424,597 to 426,828 12087 mRNA_3720: 12088 - HMMPfam-Conserved hypothetical protein (DUF2461)-PF09365,TIGRFAM-TIGR02453 TIGR02453 family protein-TIGR02453, at 427,096 to 428,543 12088

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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423,842 - +1.6
423,856 - -0.6
424,142 + +0.0
424,291 - -0.1
426,772 + -1.0
426,924 + +2.0
426,943 - -0.6
426,946 + +0.1
427,052 + -0.3
427,076 + +1.3
427,090 + +0.5
427,208 - -0.2
427,226 + +0.7
427,231 + +0.7
427,237 - +0.6
427,240 + +0.4
427,242 + 12088 mRNA_3720 0.10 -0.8
427,351 + 12088 mRNA_3720 0.18 +0.4
427,363 - 12088 mRNA_3720 0.18 -0.2
427,371 - 12088 mRNA_3720 0.19 -0.3
427,372 + 12088 mRNA_3720 0.19 +0.5
427,372 + 12088 mRNA_3720 0.19 -0.6
427,506 - 12088 mRNA_3720 0.28 +0.1
427,522 - 12088 mRNA_3720 0.29 -0.1
427,532 - 12088 mRNA_3720 0.30 -0.4
427,546 + 12088 mRNA_3720 0.31 +0.7
427,671 + 12088 mRNA_3720 0.40 +0.2

Or see this region's nucleotide sequence