Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3721

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12088 and 12089 are separated by 216 nucleotides12089 and 12090 are separated by 430 nucleotides mRNA_3720: 12088 - HMMPfam-Conserved hypothetical protein (DUF2461)-PF09365,TIGRFAM-TIGR02453 TIGR02453 family protein-TIGR02453, at 427,096 to 428,543 12088 mRNA_3721: 12089 - K14544 UTP22, NOL6 U3 small nucleolar RNA-associated protein 22, at 428,760 to 433,033 12089 mRNA_3722: 12090 - K11251 H2A histone H2A, at 433,464 to 434,074 12090

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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427,957 + 12088 mRNA_3720 0.59 +1.0
428,117 - 12088 mRNA_3720 0.71 +0.1
428,117 + 12088 mRNA_3720 0.71 -1.5
428,378 - 12088 mRNA_3720 0.89 +0.5
428,412 - -0.3
428,418 + -0.1
428,425 + -0.7
428,553 - -0.3
428,557 - -1.1
428,571 - +0.7
428,575 + +0.6
428,586 + -0.6
428,596 + +0.5
428,707 - -0.1
428,720 - +0.9
428,727 + -0.1
428,733 + +0.8
433,139 - +0.5
433,186 + +1.0
433,267 + -0.9
433,551 + 12090 mRNA_3722 0.14 +1.5
433,741 + 12090 mRNA_3722 0.45 -2.0
433,869 + 12090 mRNA_3722 0.66 -0.7
433,880 - 12090 mRNA_3722 0.68 -0.5

Or see this region's nucleotide sequence