Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3733

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12100 and 12101 are separated by 405 nucleotides12101 and 12102 are separated by 482 nucleotides mRNA_3732: 12100 - K02541 MCM3 DNA replication licensing factor MCM3, at 453,754 to 456,999 12100 mRNA_3733: 12101 - BLAST Hybrid signal transduction histidine kinase B [Leucoa..., at 457,405 to 460,471 12101 mRNA_3734: 12102 - Interpro Protein HRI1, at 460,954 to 461,748 12102

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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457,115 + -0.4
457,142 - +0.2
457,155 + -2.5
457,158 - -1.1
457,170 + -0.1
457,174 - +2.3
457,175 + +0.5
457,175 - -0.1
457,178 - +1.6
457,307 - +0.4
457,330 - +0.8
457,782 + 12101 mRNA_3733 0.12 -0.2
458,511 - 12101 mRNA_3733 0.36 +1.6
458,545 - 12101 mRNA_3733 0.37 -0.4
459,539 - 12101 mRNA_3733 0.70 -4.4
459,540 + 12101 mRNA_3733 0.70 -0.1
459,839 - 12101 mRNA_3733 0.79 +1.3
460,006 - 12101 mRNA_3733 0.85 +0.0
460,010 - 12101 mRNA_3733 0.85 +0.6
460,047 - 12101 mRNA_3733 0.86 -0.4
460,141 + 12101 mRNA_3733 0.89 +0.4
460,142 - 12101 mRNA_3733 0.89 +0.4
460,150 + 12101 mRNA_3733 0.90 -0.0
460,152 - 12101 mRNA_3733 0.90 +1.1
460,158 - 12101 mRNA_3733 0.90 +0.4
460,163 - 12101 mRNA_3733 0.90 -0.6
460,170 + +0.5
460,171 - +1.2
460,175 - -0.1
460,190 + -0.5
460,198 + +1.0
460,320 - +1.6
460,321 - -0.1
460,326 - -0.7
460,331 + -0.7
460,342 + +1.6
460,348 - -0.0
460,352 + -0.2
460,373 - -0.9
460,474 - +0.4
460,514 - +0.8
460,518 - +0.7
460,519 + -0.2
460,525 + +0.5
460,532 + -0.1
460,542 - +0.1
460,544 + +1.2
460,556 + +0.7
460,562 - +0.0
460,564 - -0.2
460,569 + +0.8
460,599 + -0.6
460,606 - +0.0
460,611 - +0.3
460,612 - -0.1
460,618 + -1.0
460,631 - +0.7
460,631 + +0.2
460,636 + +1.4
460,636 - +0.4
460,643 - -0.3
460,648 - +0.2
460,652 - +0.5
460,661 - +2.8
460,675 + +1.2
460,681 + -1.3
460,824 + -0.2
460,901 - -0.0
461,224 - 12102 mRNA_3734 0.34 +0.9
461,243 - 12102 mRNA_3734 0.36 +0.2

Or see this region's nucleotide sequence