Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3747

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12114 and 12115 are separated by 749 nucleotides12115 and 12116 are separated by 808 nucleotides mRNA_3746: 12114 - Hypothetical Protein, at 487,127 to 488,004 12114 mRNA_3747: 12115 - Hypothetical Protein, at 488,754 to 489,655 12115 mRNA_3748: 12116 - K00658 DLST, sucB 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase), at 490,464 to 492,382 12116

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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487,797 + 12114 mRNA_3746 0.76 +0.1
487,955 - -0.4
487,978 + -0.8
488,005 - +0.3
488,106 + +0.7
488,157 - +0.3
488,252 + +0.7
488,261 - +1.5
488,388 - +1.1
488,712 + +0.6
488,836 + -0.8
488,846 + 12115 mRNA_3747 0.10 +0.1
488,863 + 12115 mRNA_3747 0.12 -0.4
488,866 - 12115 mRNA_3747 0.12 +0.7
488,880 - 12115 mRNA_3747 0.14 -0.6
489,084 - 12115 mRNA_3747 0.37 +0.8
489,149 + 12115 mRNA_3747 0.44 -1.0
489,440 - 12115 mRNA_3747 0.76 +3.4
489,443 - 12115 mRNA_3747 0.76 +0.2
489,448 + 12115 mRNA_3747 0.77 -0.8
489,449 + 12115 mRNA_3747 0.77 +1.9
489,485 - 12115 mRNA_3747 0.81 +0.2
489,591 - -2.4
490,120 - -0.2
490,449 + -1.1

Or see this region's nucleotide sequence