Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3764

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12131 and 12132 are separated by 155 nucleotides12132 and 12133 are separated by 154 nucleotides12133 and 12134 are separated by 100 nucleotides mRNA_3763: 12131 - Hypothetical Protein, at 526,166 to 531,244 12131 mRNA_3764: 12132 - K11808 ADE2 phosphoribosylaminoimidazole carboxylase, at 531,400 to 533,650 12132 mRNA_3765: 12133 - K02902 RP-L28, MRPL28, rpmB large subunit ribosomal protein L28, at 533,805 to 534,326 12133 mRNA_3766: 12134 - K20372 TBC1D20, GYP8 TBC1 domain family member 20, at 534,427 to 536,780 12134

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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530,452 - 12131 mRNA_3763 0.84 -0.1
530,559 - 12131 mRNA_3763 0.86 -0.4
530,902 + +0.8
533,560 - -1.2
533,685 - +0.1
533,694 + -0.8
533,694 - -1.1
533,722 + -0.5
534,314 + +0.0
534,437 - +0.2
534,438 - +1.2
534,446 + -0.1
534,452 + +1.8

Or see this region's nucleotide sequence