Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3817

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12184 and 12185 are separated by 303 nucleotides12185 and 12186 are separated by 87 nucleotides mRNA_3816: 12184 - KOG3613 Dopey and related predicted leucine zipper transcription factors, at 648,075 to 655,221 12184 mRNA_3817: 12185 - SUPERFAMILY--SSF52047, at 655,525 to 657,844 12185 mRNA_3818: 12186 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 657,932 to 659,126 12186

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
654,630 + +1.4
654,720 + +1.0
654,874 - +0.7
654,877 - +1.6
654,903 - +0.7
655,022 - +1.2
655,026 - +0.6
655,039 + +0.8
655,150 - +1.3
655,169 + -0.4
655,179 + -0.2
655,185 - +0.3
655,191 + +0.7
655,195 + +0.8
655,211 - +1.3
655,342 - +0.1
655,496 - +0.7
655,507 - +0.4
655,538 - +1.9
655,564 - +1.2
655,771 - 12185 mRNA_3817 0.11 +0.4
655,833 - 12185 mRNA_3817 0.13 -0.9
656,113 - 12185 mRNA_3817 0.25 -1.7
656,542 - 12185 mRNA_3817 0.44 +1.1
656,577 + 12185 mRNA_3817 0.45 +1.9
656,793 - 12185 mRNA_3817 0.55 +0.3
656,856 + 12185 mRNA_3817 0.57 +0.4
656,868 - 12185 mRNA_3817 0.58 +1.2
656,934 + 12185 mRNA_3817 0.61 -0.0
656,958 - 12185 mRNA_3817 0.62 +1.5
656,961 - 12185 mRNA_3817 0.62 -0.1
656,962 + 12185 mRNA_3817 0.62 -0.5
657,027 + 12185 mRNA_3817 0.65 +1.2
657,222 - 12185 mRNA_3817 0.73 +0.4
657,234 + 12185 mRNA_3817 0.74 -0.1
657,235 + 12185 mRNA_3817 0.74 +0.6
657,433 - 12185 mRNA_3817 0.82 +0.4
657,438 - 12185 mRNA_3817 0.82 -1.3
657,676 - +0.3
657,704 - -0.1
658,049 - +0.1
658,118 - 12186 mRNA_3818 0.16 -1.9
658,122 + 12186 mRNA_3818 0.16 +1.4
658,455 - 12186 mRNA_3818 0.44 +0.4
658,649 - 12186 mRNA_3818 0.60 +0.2
658,729 - 12186 mRNA_3818 0.67 -1.0
658,843 - 12186 mRNA_3818 0.76 -0.8

Or see this region's nucleotide sequence