Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3838

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12205 and 12206 are separated by 345 nucleotides12206 and 12207 are separated by 164 nucleotides mRNA_3837: 12205 - K01044 CES1 carboxylesterase 1, at 704,391 to 706,480 12205 mRNA_3838: 12206 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 706,826 to 713,191 12206 mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713,356 to 714,077 12207

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
705,896 - 12205 mRNA_3837 0.72 -0.0
706,398 + +0.9
706,494 - +0.4
707,153 - +0.1
707,819 - 12206 mRNA_3838 0.16 -1.9
708,040 - 12206 mRNA_3838 0.19 -2.0
708,140 - 12206 mRNA_3838 0.21 -1.1
709,031 + 12206 mRNA_3838 0.35 +1.1
709,236 + 12206 mRNA_3838 0.38 -0.1
709,332 - 12206 mRNA_3838 0.39 -1.7
709,484 - 12206 mRNA_3838 0.42 -0.3
709,651 - 12206 mRNA_3838 0.44 +1.3
710,645 - 12206 mRNA_3838 0.60 -0.1
710,652 + 12206 mRNA_3838 0.60 +0.1
710,809 - 12206 mRNA_3838 0.63 +0.2
710,875 + 12206 mRNA_3838 0.64 +0.1
710,932 - 12206 mRNA_3838 0.64 +0.6
711,681 + 12206 mRNA_3838 0.76 +2.6
711,688 + 12206 mRNA_3838 0.76 +0.4
712,144 + 12206 mRNA_3838 0.84 +0.2
712,423 - 12206 mRNA_3838 0.88 -0.7
712,660 + +1.2
712,686 - -2.8
712,990 + -0.4
713,000 - -0.4
713,141 - +1.2
713,311 + +0.4
713,424 - -0.4
713,568 + 12207 mRNA_3839 0.29 -0.7
713,577 - 12207 mRNA_3839 0.31 -0.6
714,021 + -0.7
714,033 + +0.2
714,091 - +0.2

Or see this region's nucleotide sequence