Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3847

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12215 and 12216 are separated by 513 nucleotides mRNA_3847: 12215 - Hypothetical Protein, at 732,647 to 733,359 12215 mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733,873 to 734,892 12216

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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731,673 + +0.2
731,726 - +0.8
731,785 - +1.6
732,199 - -0.7
732,494 + +0.8
732,583 - -0.2
732,584 + -0.9
732,616 - +0.7
733,234 - 12215 mRNA_3847 0.82 +0.0
733,346 + -0.1
733,381 + +0.7
733,491 + -0.0
733,513 + -0.5
733,792 + -0.3
733,792 + +0.0
733,798 + +0.4
733,803 + +0.2
733,803 - -1.5
733,811 + -1.5
733,813 - +2.0
733,816 - -1.9
733,824 - +0.8
733,933 - +0.8
733,946 - +0.3
733,958 - +1.3
733,968 - +0.5
733,971 + +0.2
733,972 - -0.3
734,102 - 12216 mRNA_3848 0.22 +0.4
734,127 + 12216 mRNA_3848 0.25 -0.4
734,129 + 12216 mRNA_3848 0.25 +2.7
734,261 - 12216 mRNA_3848 0.38 +0.5

Or see this region's nucleotide sequence