Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3859

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12226 and 12227 are separated by 298 nucleotides12227 and 12228 are separated by 359 nucleotides mRNA_3858: 12226 - K17890 ATG16L1 autophagy-related protein 16-1, at 757,885 to 761,783 12226 mRNA_3859: 12227 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 762,082 to 763,041 12227 mRNA_3860: 12228 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 763,401 to 765,833 12228

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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761,221 + 12226 mRNA_3858 0.86 -0.6
761,481 - +0.5
761,511 - -0.7
761,590 - +0.9
761,650 + -0.9
761,838 + +0.6
762,365 - 12227 mRNA_3859 0.29 +3.1
762,366 + 12227 mRNA_3859 0.30 +1.5
762,379 + 12227 mRNA_3859 0.31 +0.9
762,413 - 12227 mRNA_3859 0.34 +0.2
762,552 + 12227 mRNA_3859 0.49 -0.3
762,570 + 12227 mRNA_3859 0.51 +0.3
762,669 - 12227 mRNA_3859 0.61 -0.2
763,096 - -0.4
763,111 - +0.3
763,130 + +0.5
763,276 - -0.3
763,418 - -1.7
763,540 + +0.4
763,652 + 12228 mRNA_3860 0.10 +0.2
763,654 - 12228 mRNA_3860 0.10 +0.2
763,866 - 12228 mRNA_3860 0.19 -0.3
763,931 - 12228 mRNA_3860 0.22 +2.5
763,976 - 12228 mRNA_3860 0.24 +1.0
763,977 + 12228 mRNA_3860 0.24 +1.1
763,977 + 12228 mRNA_3860 0.24 +2.3

Or see this region's nucleotide sequence