Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3948

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12315 and 12316 are separated by 119 nucleotides12316 and 12317 are separated by 434 nucleotides mRNA_3947: 12315 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 970,867 to 972,281 12315 mRNA_3948: 12316 - Hypothetical Protein, at 972,401 to 974,517 12316 mRNA_3949: 12317 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 974,952 to 977,086 12317

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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971,667 - 12315 mRNA_3947 0.57 -0.0
971,677 + 12315 mRNA_3947 0.57 -0.2
972,120 + 12315 mRNA_3947 0.89 -0.1
972,262 + +0.2
972,457 + +0.9
972,651 - 12316 mRNA_3948 0.12 +1.0
973,497 - 12316 mRNA_3948 0.52 -0.4
973,565 + 12316 mRNA_3948 0.55 +1.2
973,895 + 12316 mRNA_3948 0.71 +0.9
974,192 - 12316 mRNA_3948 0.85 +1.4
974,229 - 12316 mRNA_3948 0.86 +0.8
974,270 + 12316 mRNA_3948 0.88 +0.4
974,274 - 12316 mRNA_3948 0.88 +1.0
974,727 - +0.6
975,035 - +0.4
975,334 + 12317 mRNA_3949 0.18 +0.1
975,352 - 12317 mRNA_3949 0.19 +0.7
975,384 + 12317 mRNA_3949 0.20 +1.5
975,444 - 12317 mRNA_3949 0.23 +0.3
975,461 - 12317 mRNA_3949 0.24 +1.8
975,477 - 12317 mRNA_3949 0.25 +1.5
975,479 + 12317 mRNA_3949 0.25 +0.3

Or see this region's nucleotide sequence