Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3951

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12318 and 12319 are separated by 979 nucleotides12319 and 12320 are separated by 85 nucleotides mRNA_3950: 12318 - K03456 PPP2R1 serine/threonine-protein phosphatase 2A regulatory subunit A, at 977,447 to 979,479 12318 mRNA_3951: 12319 - K02967 RP-S2, MRPS2, rpsB small subunit ribosomal protein S2, at 980,459 to 981,716 12319 mRNA_3952: 12320 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 981,802 to 983,195 12320

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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979,505 + +1.2
979,522 - -1.1
979,528 + +0.2
979,535 - -0.0
979,537 - -0.2
979,659 + -0.2
979,667 - -0.1
979,668 - +0.4
979,689 - +1.1
979,692 + +0.2
979,964 + -0.6
979,965 + +1.0
979,969 - -0.9
980,136 - -0.1
980,156 - +0.8
980,392 + +0.2
980,393 - -0.5
980,401 - -0.9
980,402 + -0.4
980,402 + +1.9
980,404 - +0.3
980,419 - +0.4
980,419 + -0.1
980,419 - -0.1
980,430 - +1.4
980,433 + +0.6
981,699 - +0.6
981,730 + -0.5
981,751 + +0.1
981,876 + -0.0
981,902 - -0.8
982,047 - 12320 mRNA_3952 0.18 +0.8
982,050 + 12320 mRNA_3952 0.18 -0.1
982,210 - 12320 mRNA_3952 0.29 +0.1
982,326 - 12320 mRNA_3952 0.38 +1.7
982,465 - 12320 mRNA_3952 0.48 +0.8
982,469 - 12320 mRNA_3952 0.48 +0.2
982,476 - 12320 mRNA_3952 0.48 +0.2

Or see this region's nucleotide sequence