Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3963

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12330 and 12331 are separated by 67 nucleotides12331 and 12332 are separated by 102 nucleotides mRNA_3962: 12330 - K09647 IMP1 mitochondrial inner membrane protease subunit 1, at 1,012,069 to 1,012,859 12330 mRNA_3963: 12331 - HMMPfam-Domain of unknown function (DUF4504)-PF14953, at 1,012,927 to 1,013,924 12331 mRNA_3964: 12332 - Hypothetical Protein, at 1,014,027 to 1,014,928 12332

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,012,020 - -0.7
1,012,046 + -0.3
1,013,035 - 12331 mRNA_3963 0.11 +2.2
1,013,608 + 12331 mRNA_3963 0.68 -0.3
1,013,620 - 12331 mRNA_3963 0.69 +0.3
1,013,628 + 12331 mRNA_3963 0.70 +0.2
1,014,066 - +1.6
1,014,507 + 12332 mRNA_3964 0.53 +0.3
1,014,532 + 12332 mRNA_3964 0.56 +0.8
1,014,634 - 12332 mRNA_3964 0.67 +0.5
1,014,639 + 12332 mRNA_3964 0.68 -2.2
1,014,661 - 12332 mRNA_3964 0.70 +0.9
1,014,681 + 12332 mRNA_3964 0.73 -0.2
1,014,725 + 12332 mRNA_3964 0.77 +0.1
1,014,823 + 12332 mRNA_3964 0.88 +0.7
1,014,824 + 12332 mRNA_3964 0.88 +0.5

Or see this region's nucleotide sequence