Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4053

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12420 and 12421 are separated by 381 nucleotides12421 and 12422 are separated by 163 nucleotides mRNA_4052: 12420 - HMMPfam-Transcription factor Opi1-PF08618, at 1,243,077 to 1,245,269 12420 mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1,245,651 to 1,248,069 12421 mRNA_4054: 12422 - KOG2973 Uncharacterized conserved protein, at 1,248,233 to 1,250,054 12422

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,244,768 + 12420 mRNA_4052 0.77 +0.7
1,244,791 + 12420 mRNA_4052 0.78 +0.7
1,244,922 - 12420 mRNA_4052 0.84 +0.5
1,244,928 + 12420 mRNA_4052 0.84 +0.1
1,245,061 - +1.5
1,245,066 - -0.0
1,245,089 + +0.4
1,245,193 - -0.6
1,245,198 - +0.5
1,245,201 + +0.3
1,245,343 - -1.0
1,245,353 + +0.5
1,245,357 - +0.1
1,245,364 - +0.9
1,245,365 + +0.1
1,245,395 - +0.7
1,245,411 + +0.7
1,245,512 - +0.2
1,245,624 + -0.3
1,248,143 - -0.4
1,248,152 + +2.1
1,248,152 + +0.8
1,248,153 - +0.1
1,248,157 - +2.1
1,248,164 + +1.1
1,248,171 - +0.2
1,248,171 + +0.3
1,248,190 + +1.0
1,248,279 - -1.8
1,248,342 + -1.9
1,248,445 + 12422 mRNA_4054 0.12 +0.0
1,248,631 + 12422 mRNA_4054 0.22 -0.1

Or see this region's nucleotide sequence