Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4065

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12432 and 12433 are separated by 138 nucleotides12433 and 12434 are separated by 946 nucleotides mRNA_4064: 12432 - HMMPfam-Rdx family-PF10262,SUPERFAMILY--SSF52833, at 1,269,727 to 1,270,597 12432 mRNA_4065: 12433 - KOG1198 Zinc-binding oxidoreductase, at 1,270,736 to 1,272,325 12433 mRNA_4066: 12434 - K03426 E3.6.1.22, NUDT12, nudC NAD+ diphosphatase, at 1,273,272 to 1,275,258 12434

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,270,051 + 12432 mRNA_4064 0.37 -2.7
1,270,090 + 12432 mRNA_4064 0.42 -0.5
1,270,352 + 12432 mRNA_4064 0.72 +0.6
1,270,365 - 12432 mRNA_4064 0.73 +1.3
1,270,365 - 12432 mRNA_4064 0.73 -0.5
1,270,369 - 12432 mRNA_4064 0.74 +0.8
1,270,383 + 12432 mRNA_4064 0.75 -0.2
1,270,644 - -0.3
1,270,646 + +0.5
1,270,650 + +0.7
1,270,663 - +0.4
1,270,664 - +0.9
1,270,664 - +0.9
1,270,664 + +0.9
1,270,667 + +0.9
1,270,671 - +0.0
1,270,804 - +1.6
1,270,807 - +0.4
1,270,808 - -1.7
1,270,901 - 12433 mRNA_4065 0.10 +1.6
1,271,102 + 12433 mRNA_4065 0.23 +0.4
1,271,408 - 12433 mRNA_4065 0.42 +3.4
1,271,765 + 12433 mRNA_4065 0.65 -0.8
1,272,566 - +1.1
1,272,861 - +0.9
1,272,867 + +0.4
1,272,885 - -2.8
1,272,890 + +0.4
1,272,892 - +0.7
1,272,903 + -1.0
1,272,906 - +0.2
1,272,940 + -0.2
1,272,998 + -1.5

Or see this region's nucleotide sequence