Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4134

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12501 and 12502 are separated by 670 nucleotides mRNA_4133: 12501 - Hypothetical Protein, at 1,428,021 to 1,428,981 12501 mRNA_4134: 12502 - Hypothetical Protein, at 1,429,652 to 1,434,767 12502

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,428,655 - 12501 mRNA_4133 0.66 -0.3
1,428,655 - 12501 mRNA_4133 0.66 +0.0
1,428,664 + 12501 mRNA_4133 0.67 +0.8
1,428,664 - 12501 mRNA_4133 0.67 -0.8
1,428,672 + 12501 mRNA_4133 0.68 +1.0
1,428,680 - 12501 mRNA_4133 0.69 -0.0
1,428,685 + 12501 mRNA_4133 0.69 +2.1
1,428,688 + 12501 mRNA_4133 0.69 -0.1
1,428,693 - 12501 mRNA_4133 0.70 -0.9
1,428,696 + 12501 mRNA_4133 0.70 +2.2
1,428,710 + 12501 mRNA_4133 0.72 +0.7
1,428,963 - +0.1
1,428,983 + +0.5
1,429,118 - +0.7
1,429,132 + -1.5
1,429,292 - +0.2
1,429,429 - +1.4
1,430,131 - -0.6
1,431,058 - 12502 mRNA_4134 0.27 -0.6
1,431,058 + 12502 mRNA_4134 0.27 +0.9
1,431,668 + 12502 mRNA_4134 0.39 +1.1
1,431,755 + 12502 mRNA_4134 0.41 -0.8
1,431,848 - 12502 mRNA_4134 0.43 +1.4
1,432,043 - 12502 mRNA_4134 0.47 -1.1
1,432,132 + 12502 mRNA_4134 0.48 -0.1
1,432,182 - 12502 mRNA_4134 0.49 +0.0
1,432,487 - 12502 mRNA_4134 0.55 -0.1
1,432,878 - 12502 mRNA_4134 0.63 -0.5
1,432,918 - 12502 mRNA_4134 0.64 +0.0
1,433,357 + 12502 mRNA_4134 0.72 +0.1
1,433,502 - 12502 mRNA_4134 0.75 +0.4
1,433,654 - 12502 mRNA_4134 0.78 +0.2
1,434,343 - -1.2
1,434,610 - +1.2
1,434,941 + -0.6
1,434,947 + +1.0
1,435,096 - +0.1
1,435,108 + -1.1
1,435,118 + +0.5
1,435,260 - -0.1
1,435,263 - +1.0
1,435,270 + -0.5
1,435,277 + +1.1
1,435,282 - +0.2
1,435,292 + -1.5
1,435,434 - -0.4
1,435,538 + -0.1

Or see this region's nucleotide sequence