Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4150

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12518 and 12519 are separated by 219 nucleotides mRNA_4150: 12518 - K15101 SLC25A2_15, ORNT solute carrier family 25 (mitochondrial ornithine transporter) member 2/15, at 1,474,774 to 1,476,217 12518 mRNA_4151: 12519 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,476,437 to 1,477,857 12519

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,473,882 - +0.6
1,474,012 - -0.2
1,474,132 - +1.4
1,474,165 + +0.1
1,474,226 + +0.7
1,474,326 + +1.3
1,474,345 - -0.1
1,474,560 - +0.2
1,474,572 - +1.4
1,474,577 + +2.4
1,474,577 - +0.0
1,474,583 + +0.4
1,474,586 + +1.1
1,474,586 + -0.9
1,474,594 - +0.1
1,474,601 - -0.2
1,474,742 - +0.1
1,474,744 - +0.2
1,474,757 + -0.7
1,474,890 - +1.2
1,475,183 + 12518 mRNA_4150 0.28 -1.4
1,475,762 + 12518 mRNA_4150 0.68 +1.2
1,475,767 + 12518 mRNA_4150 0.69 +0.1
1,475,794 + 12518 mRNA_4150 0.71 +0.9
1,475,941 - 12518 mRNA_4150 0.81 -1.3
1,475,942 + 12518 mRNA_4150 0.81 -0.4
1,476,013 + 12518 mRNA_4150 0.86 +2.0
1,476,189 + -0.6
1,476,241 - -1.0
1,476,363 + +1.2
1,476,428 + -0.2
1,476,501 - -0.3
1,476,644 - 12519 mRNA_4151 0.15 +0.7
1,476,655 - 12519 mRNA_4151 0.15 +1.0

Or see this region's nucleotide sequence