Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4158

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12525 and 12526 are separated by 177 nucleotides12526 and 12527 are separated by 461 nucleotides mRNA_4157: 12525 - KOG2823 Cellular protein (glioma tumor suppressor candidate region gene 2), at 1,494,663 to 1,496,087 12525 mRNA_4158: 12526 - K11319 ING3 inhibitor of growth protein 3, at 1,496,265 to 1,497,748 12526 mRNA_4159: 12527 - K03002 RPA2, POLR1B DNA-directed RNA polymerase I subunit RPA2, at 1,498,210 to 1,502,276 12527

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,496,545 + 12526 mRNA_4158 0.19 -0.5
1,497,789 - +0.8
1,497,790 - +1.5
1,497,796 - +0.7
1,497,797 - -1.2
1,497,809 - -0.1
1,497,811 + +0.0
1,497,818 + +1.5
1,497,822 - +0.9
1,497,993 + +0.7
1,498,005 - +1.6
1,498,019 + -0.8
1,498,019 + +1.1
1,498,025 + +1.1
1,498,050 - +0.1

Or see this region's nucleotide sequence