Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4194

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12561 and 12562 are separated by 246 nucleotides12562 and 12563 are separated by 172 nucleotides mRNA_4193: 12561 - Hypothetical Protein, at 1,580,428 to 1,584,449 12561 mRNA_4194: 12562 - K01934 MTHFS 5-formyltetrahydrofolate cyclo-ligase, at 1,584,696 to 1,585,623 12562 mRNA_4195: 12563 - HMMPfam-Protein of unknown function (DUF2962)-PF11176, at 1,585,796 to 1,586,681 12563

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,584,080 - +1.4
1,584,231 + +0.3
1,584,499 - +0.3
1,584,516 + +0.3
1,584,635 + +1.2
1,584,643 + -0.2
1,584,654 - +0.4
1,584,665 + -0.6
1,584,681 + -1.4
1,584,682 - -2.0
1,584,683 + -0.4
1,584,812 - 12562 mRNA_4194 0.12 -1.0
1,584,817 - 12562 mRNA_4194 0.13 +0.7
1,584,929 - 12562 mRNA_4194 0.25 -0.2
1,585,105 + 12562 mRNA_4194 0.44 +2.1
1,585,253 - 12562 mRNA_4194 0.60 -2.3
1,585,812 - +0.3

Or see this region's nucleotide sequence