Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4222

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12589 and 12590 are separated by 68 nucleotides12590 and 12591 are separated by 52 nucleotides mRNA_4221: 12589 - HMMPfam-Sodium/hydrogen exchanger family-PF00999, at 1,646,104 to 1,647,809 12589 mRNA_4222: 12590 - K17969 FIS1, TTC11, MDV2 mitochondrial fission 1 protein, at 1,647,878 to 1,648,825 12590 mRNA_4223: 12591 - KOG3957 Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase, at 1,648,878 to 1,650,600 12591

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,647,021 - 12589 mRNA_4221 0.54 +0.3
1,647,286 + 12589 mRNA_4221 0.69 +0.3
1,647,610 - 12589 mRNA_4221 0.88 -2.0
1,647,772 + +1.6
1,648,068 - 12590 mRNA_4222 0.20 +0.3
1,648,351 - 12590 mRNA_4222 0.50 -0.4
1,648,383 + 12590 mRNA_4222 0.53 -0.2
1,648,424 + 12590 mRNA_4222 0.58 +0.5
1,648,507 + 12590 mRNA_4222 0.66 -1.5
1,648,519 + 12590 mRNA_4222 0.68 -0.7
1,648,539 + 12590 mRNA_4222 0.70 +1.6
1,648,795 + -0.8
1,648,823 + +0.9
1,648,872 + -1.5
1,648,923 - +1.9
1,649,142 - 12591 mRNA_4223 0.15 -1.5
1,649,400 + 12591 mRNA_4223 0.30 +1.1
1,649,543 - 12591 mRNA_4223 0.39 +0.0
1,649,544 + 12591 mRNA_4223 0.39 -0.7
1,649,601 + 12591 mRNA_4223 0.42 +0.2
1,649,787 + 12591 mRNA_4223 0.53 -0.9
1,649,791 + 12591 mRNA_4223 0.53 -0.4

Or see this region's nucleotide sequence