Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4265

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12632 and 12633 are separated by 526 nucleotides12633 and 12634 are separated by 525 nucleotides mRNA_4264: 12632 - Hypothetical Protein, at 1,744,091 to 1,745,665 12632 mRNA_4265: 12633 - BLAST lytic polysaccharide monooxygenase [Cenococcum geophi..., at 1,746,192 to 1,748,005 12633 mRNA_4266: 12634 - BLAST sucrase/ferredoxin-like domain-containing protein [Rh..., at 1,748,531 to 1,749,378 12634

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,745,811 + -0.2
1,746,478 + 12633 mRNA_4265 0.16 +2.7
1,746,712 - 12633 mRNA_4265 0.29 +0.9
1,746,820 - 12633 mRNA_4265 0.35 -0.6
1,746,852 + 12633 mRNA_4265 0.36 +1.5
1,747,128 + 12633 mRNA_4265 0.52 +0.7
1,747,232 - 12633 mRNA_4265 0.57 -1.5
1,747,426 - 12633 mRNA_4265 0.68 -0.4
1,747,695 - 12633 mRNA_4265 0.83 -1.6
1,747,697 - 12633 mRNA_4265 0.83 +0.4
1,748,152 - +0.6
1,748,193 + -0.6
1,748,211 - -0.2
1,748,211 - -1.7
1,748,343 - +2.6
1,748,365 + +0.1
1,748,468 - +0.9
1,748,471 + +1.7
1,748,476 + +0.9
1,748,480 + +0.5
1,748,480 + +0.2
1,748,484 - -0.6
1,748,486 + +0.2
1,748,487 + +0.3
1,748,490 + -0.6
1,748,495 + +1.0
1,748,501 + -0.8
1,748,533 + -1.0
1,748,637 + 12634 mRNA_4266 0.12 +0.3
1,748,677 - 12634 mRNA_4266 0.17 +0.3
1,748,776 - 12634 mRNA_4266 0.29 +1.3
1,748,801 + 12634 mRNA_4266 0.32 +1.8
1,748,801 + 12634 mRNA_4266 0.32 -0.1
1,748,817 + 12634 mRNA_4266 0.34 +0.1

Or see this region's nucleotide sequence