Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4310

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12678 and 12679 are separated by 544 nucleotides mRNA_4310: 12678 - Hypothetical Protein, at 1,869,804 to 1,870,732 12678 mRNA_4311: 12679 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,871,277 to 1,872,200 12679

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,869,043 - -0.3
1,869,141 - -0.5
1,869,141 - -1.7
1,869,311 - +0.1
1,869,476 + -0.1
1,869,625 - -0.0
1,870,354 + 12678 mRNA_4310 0.59 +1.0
1,870,486 - 12678 mRNA_4310 0.73 +0.7
1,870,625 + 12678 mRNA_4310 0.88 +0.2
1,870,647 + +1.0
1,870,761 + +1.2
1,870,771 + +0.8
1,870,783 - +1.4
1,870,785 + -1.0
1,870,788 - +2.0
1,870,812 + +2.0
1,870,967 + +1.5
1,871,079 + +0.6
1,871,083 - +1.0
1,871,102 + +1.1
1,871,524 - 12679 mRNA_4311 0.27 +0.3
1,871,611 + 12679 mRNA_4311 0.36 +0.1
1,871,676 + 12679 mRNA_4311 0.43 -0.9

Or see this region's nucleotide sequence