Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4323

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12690 and 12691 are separated by 372 nucleotides12691 and 12692 are separated by 281 nucleotides mRNA_4322: 12690 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,905,474 to 1,907,958 12690 mRNA_4323: 12691 - KOG1198 Zinc-binding oxidoreductase, at 1,908,331 to 1,909,628 12691 mRNA_4324: 12692 - K18754 LIN28 protein lin-28, at 1,909,910 to 1,911,534 12692

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,907,507 - 12690 mRNA_4322 0.82 +0.9
1,907,638 + 12690 mRNA_4322 0.87 -0.0
1,907,758 + +0.9
1,907,843 + +0.6
1,907,929 - +0.4
1,908,105 - +0.6
1,908,202 + -0.0
1,908,249 + +0.7
1,908,250 + +1.3
1,908,255 + +1.1
1,908,257 + +0.8
1,908,259 - +0.2
1,908,297 + +1.2
1,908,371 - +1.2
1,908,386 - +0.3
1,908,398 + +0.5
1,908,414 - +0.7
1,908,432 - +0.7
1,908,695 + 12691 mRNA_4323 0.28 -0.3
1,908,716 + 12691 mRNA_4323 0.30 +1.0
1,908,835 - 12691 mRNA_4323 0.39 +0.0
1,908,840 + 12691 mRNA_4323 0.39 +0.3
1,908,862 + 12691 mRNA_4323 0.41 -0.3
1,909,462 - 12691 mRNA_4323 0.87 -0.4
1,910,033 + +0.6
1,910,167 + 12692 mRNA_4324 0.16 +0.1
1,910,422 + 12692 mRNA_4324 0.32 +0.0

Or see this region's nucleotide sequence