Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4361

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_4361: 12729 - K10576 UBE2H, UBC8 ubiquitin-conjugating enzyme E2 H, at 4,362 to 5,348 12729

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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3,398 + +1.2
3,399 + +0.5
3,417 + -0.5
3,516 + +0.1
3,568 - -0.6
3,574 - +0.6
3,578 + +0.0
3,632 + +0.1
3,691 + +0.5
3,692 - -1.0
3,695 - -0.3
3,719 - +1.5
3,759 + +0.9
3,775 + -1.3
3,843 - +1.1
3,845 - -0.4
3,845 - +0.7
3,850 + -0.8
3,852 + -0.7
3,859 + +0.2
4,188 - -0.8
4,280 + -2.2
4,291 - +2.2
4,300 - +0.3
4,312 + +0.3
4,465 - 12729 mRNA_4361 0.10 +0.5
4,578 - 12729 mRNA_4361 0.22 +0.8
4,584 - 12729 mRNA_4361 0.22 +0.4
4,645 + 12729 mRNA_4361 0.29 +0.2
4,740 - 12729 mRNA_4361 0.38 -3.3
4,876 + 12729 mRNA_4361 0.52 +0.0
5,182 + 12729 mRNA_4361 0.83 -0.6
5,211 + 12729 mRNA_4361 0.86 -0.7
5,272 + -0.5
5,280 + +0.7
5,309 + +1.0
5,341 + -0.6
5,430 + +0.5
5,465 + -1.0
5,604 - +0.2
5,607 - +0.4
5,690 + +1.5
5,700 - +0.4
5,742 - -0.7
5,755 - -0.7
5,755 - +0.6
5,884 + +0.1
5,896 + +0.8
5,900 + -0.1
6,017 - +0.0
6,033 + -0.2
6,042 - +0.4
6,051 + +0.2
6,053 - +0.3
6,209 - +0.5
6,226 - +1.4
6,282 + +1.2
6,285 + -0.8
6,320 + +0.3
6,322 + +0.4
6,348 + +0.4

Or see this region's nucleotide sequence