Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4389

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12756 and 12757 are separated by 358 nucleotides12757 and 12758 are separated by 711 nucleotides mRNA_4388: 12756 - KOG2084 Predicted histone tail methylase containing SET domain, at 72,775 to 74,031 12756 mRNA_4389: 12757 - K10735 GINS4, SLD5 GINS complex subunit 4, at 74,390 to 75,580 12757 mRNA_4390: 12758 - K16261 YAT yeast amino acid transporter, at 76,292 to 78,680 12758

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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73,699 - 12756 mRNA_4388 0.74 -1.7
73,962 - +0.2
73,973 + +1.3
74,259 - -0.2
74,274 - -0.6
74,276 - +0.9
74,285 - +1.0
74,289 + +0.2
74,334 + +0.2
74,341 - +0.8
75,647 - -0.4
75,673 - +0.4
75,756 - -0.3
75,776 + +0.3
75,797 - +0.0
75,811 + -0.6
75,811 + +0.2
75,913 + +1.0
75,920 + -0.1
75,930 + +0.1
75,933 + +0.2
75,946 - +0.5
75,955 + +0.5
75,962 + +0.7
76,090 + +0.3
76,093 - +1.9
76,098 - +0.7
76,107 + +2.1
76,125 - -0.7
76,137 - +2.3
76,142 + -0.5
76,268 + +1.2
76,408 - -1.3
76,428 + -0.1
76,430 - +0.2

Or see this region's nucleotide sequence