Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4418

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12785 and 12786 are separated by 171 nucleotides12786 and 12787 are separated by 322 nucleotides mRNA_4417: 12785 - Hypothetical Protein, at 136,437 to 137,903 12785 mRNA_4418: 12786 - KOG3683 Uncharacterized conserved protein, at 138,075 to 139,542 12786 mRNA_4419: 12787 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 139,865 to 142,182 12787

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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137,161 + 12785 mRNA_4417 0.49 +0.6
137,185 + 12785 mRNA_4417 0.51 +2.5
137,188 - 12785 mRNA_4417 0.51 -0.3
137,191 + 12785 mRNA_4417 0.51 +0.2
137,312 + 12785 mRNA_4417 0.60 -0.8
137,420 + 12785 mRNA_4417 0.67 -0.3
137,610 + 12785 mRNA_4417 0.80 +0.9
137,697 - 12785 mRNA_4417 0.86 -3.0
138,161 + +1.6
138,304 + 12786 mRNA_4418 0.16 +0.7
138,318 + 12786 mRNA_4418 0.17 +1.5
138,573 + 12786 mRNA_4418 0.34 +0.4
138,733 + 12786 mRNA_4418 0.45 +0.3
138,774 + 12786 mRNA_4418 0.48 -0.1
138,821 - 12786 mRNA_4418 0.51 -0.2
138,825 + 12786 mRNA_4418 0.51 -0.1
139,579 - +1.1
139,611 + +0.1
139,626 + +2.1
139,751 + +1.7
139,756 + -0.1
139,795 + +1.0
139,896 - +0.6
139,897 - +1.5
139,935 - -2.1
140,060 - -0.5
140,102 + 12787 mRNA_4419 0.10 +0.6
140,110 - 12787 mRNA_4419 0.11 +0.7
140,355 + 12787 mRNA_4419 0.21 +0.0
140,509 - 12787 mRNA_4419 0.28 -0.5

Or see this region's nucleotide sequence