Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4421

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12788 and 12789 are separated by 125 nucleotides12789 and 12790 are separated by 95 nucleotides mRNA_4420: 12788 - Hypothetical Protein, at 142,782 to 144,296 12788 mRNA_4421: 12789 - K17765 MDM12 mitochondrial distribution and morphology protein 12, at 144,422 to 145,671 12789 mRNA_4422: 12790 - BLAST Regulator of nonsense transcripts UPF2 [Grifola frond..., at 145,767 to 149,805 12790

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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143,440 + 12788 mRNA_4420 0.43 -0.0
143,486 - 12788 mRNA_4420 0.46 -0.6
143,644 - 12788 mRNA_4420 0.57 -0.6
143,784 + 12788 mRNA_4420 0.66 -0.1
143,797 - 12788 mRNA_4420 0.67 -0.3
144,073 - 12788 mRNA_4420 0.85 +1.3
144,090 - 12788 mRNA_4420 0.86 -0.1
144,115 - 12788 mRNA_4420 0.88 +1.0
144,234 + +0.2
144,373 + +0.0
144,383 - -1.9
145,813 - -1.2
145,833 + +0.0
146,084 - -0.3

Or see this region's nucleotide sequence