Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4469

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12836 and 12837 are separated by 302 nucleotides12837 and 12838 are separated by 475 nucleotides mRNA_4468: 12836 - K11866 STAMBP, AMSH STAM-binding protein, at 252,215 to 253,594 12836 mRNA_4469: 12837 - Hypothetical Protein, at 253,897 to 255,507 12837 mRNA_4470: 12838 - K05292 PIGT phosphatidylinositol glycan, class T, at 255,983 to 257,580 12838

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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253,518 - +0.2
253,610 + +0.5
253,610 - -0.3
253,649 + +0.4
253,777 + +0.6
253,843 - +0.6
254,575 - 12837 mRNA_4469 0.42 +2.3
254,591 - 12837 mRNA_4469 0.43 +0.6
254,685 - 12837 mRNA_4469 0.49 +1.5
254,696 + 12837 mRNA_4469 0.50 +1.7
254,741 + 12837 mRNA_4469 0.52 -1.5
254,863 - 12837 mRNA_4469 0.60 -1.0
254,874 + 12837 mRNA_4469 0.61 +0.6
254,994 + 12837 mRNA_4469 0.68 +2.5
255,188 + 12837 mRNA_4469 0.80 +1.0
255,258 - 12837 mRNA_4469 0.84 -2.9
255,259 - 12837 mRNA_4469 0.85 +0.2
255,265 - 12837 mRNA_4469 0.85 +0.6
255,283 + 12837 mRNA_4469 0.86 +2.9
255,431 - +0.3
255,436 - +2.0
255,436 + -0.9
255,449 - +2.7
255,449 - -0.2
255,592 - +0.4
255,676 + -0.1
255,721 + -0.1
255,901 + -0.4
255,902 + +0.2
255,907 + -0.0
256,022 - -1.1

Or see this region's nucleotide sequence