Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4474

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12841 and 12842 are separated by 138 nucleotides12842 and 12843 are separated by 642 nucleotides mRNA_4473: 12841 - K19782 DSS1, MSU1 exoribonuclease II, mitochondrial, at 265,412 to 268,856 12841 mRNA_4474: 12842 - K01426 E3.5.1.4, amiE amidase, at 268,995 to 271,231 12842 mRNA_4475: 12843 - K05917 CYP51 sterol 14-demethylase, at 271,874 to 274,192 12843

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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268,960 - -1.3
269,057 + -0.1
269,062 + -0.1
269,122 + -0.1
269,245 + 12842 mRNA_4474 0.11 +0.8
269,318 - 12842 mRNA_4474 0.14 +1.3
269,330 - 12842 mRNA_4474 0.15 -0.4
269,403 + 12842 mRNA_4474 0.18 -0.0
269,417 + 12842 mRNA_4474 0.19 +0.2
269,420 + 12842 mRNA_4474 0.19 +0.6
269,432 + 12842 mRNA_4474 0.20 +1.9
269,554 - 12842 mRNA_4474 0.25 +2.0
269,575 - 12842 mRNA_4474 0.26 -0.2
269,612 + 12842 mRNA_4474 0.28 +0.5
269,675 + 12842 mRNA_4474 0.30 -0.3
270,207 + 12842 mRNA_4474 0.54 +2.2
270,324 - 12842 mRNA_4474 0.59 -2.6
270,454 - 12842 mRNA_4474 0.65 +0.7
270,692 - 12842 mRNA_4474 0.76 +1.5
270,745 - 12842 mRNA_4474 0.78 +0.6
270,863 + 12842 mRNA_4474 0.84 +1.9
270,865 + 12842 mRNA_4474 0.84 -1.4
270,873 + 12842 mRNA_4474 0.84 -0.0
271,092 - +0.7
271,158 + -0.9
271,192 + -0.1
271,316 - -0.7
271,346 + -0.3
271,349 - -0.3
271,364 - -3.1
271,372 + -1.0
271,382 - +0.5
271,407 - +1.7
271,441 + -1.3
271,457 - +2.7
271,473 - +0.7
271,483 + -0.4
271,493 + +0.6
271,514 + +0.6
271,516 + -1.8
271,564 - +0.5
271,569 - +0.5
271,570 + +0.6
271,592 - -0.4
271,598 - -1.2
271,603 - -0.0
271,604 + +0.6
271,618 - +1.1
271,618 - +1.4
271,618 + +0.4
271,624 + +0.0
271,628 + +0.8
271,639 - +1.2
271,755 - +1.9
271,804 + -1.2

Or see this region's nucleotide sequence