Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4560

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12927 and 12928 are separated by 558 nucleotides12928 and 12929 are separated by 208 nucleotides mRNA_4559: 12927 - HMMPfam-PAP2 superfamily-PF01569,SMART-Acid phosphatase homologues-SM00014,SUPERFAMILY--SSF48317, at 460,890 to 462,526 12927 mRNA_4560: 12928 - Hypothetical Protein, at 463,085 to 464,279 12928 mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464,488 to 466,003 12929

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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462,587 - -2.7
462,599 - +0.6
462,761 + -1.4
462,764 + +0.9
462,872 + +0.6
462,882 + +0.0
462,894 + -0.8
463,188 + +2.9
463,888 + 12928 mRNA_4560 0.67 -0.5
464,053 - 12928 mRNA_4560 0.81 -0.5
464,163 + +0.4
464,335 + +1.4
464,335 + +0.4
464,342 + +0.2
464,371 + -0.4
464,393 - +0.1
464,444 + +0.9
464,541 - -0.2
464,547 + +0.7
464,556 - +0.9
464,563 - +0.5
465,113 - 12929 mRNA_4561 0.41 -0.5

Or see this region's nucleotide sequence