Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4597

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12964 and 12965 are separated by 101 nucleotides12965 and 12966 are separated by 581 nucleotides mRNA_4596: 12964 - KOG4009 NADH-ubiquinone oxidoreductase, subunit NDUFB10/PDSW, at 550,797 to 551,736 12964 mRNA_4597: 12965 - K01836 PGM3 phosphoacetylglucosamine mutase, at 551,838 to 553,839 12965 mRNA_4598: 12966 - K00418 QCR8, UQCRQ ubiquinol-cytochrome c reductase subunit 8, at 554,421 to 554,905 12966

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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551,784 + +0.4
553,831 - +1.5
553,864 - +0.9
554,006 - -2.3
554,125 + +0.4
554,125 + -0.6
554,126 + +1.5
554,140 - -0.1
554,143 + +0.6
554,148 + +2.4
554,149 - -0.1
554,167 + -1.9
554,422 - -0.2

Or see this region's nucleotide sequence