Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4635

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13002 and 13003 are separated by 237 nucleotides13003 and 13004 are separated by 167 nucleotides mRNA_4634: 13002 - K00873 PK, pyk pyruvate kinase, at 656,790 to 659,276 13002 mRNA_4635: 13003 - Hypothetical Protein, at 659,514 to 660,743 13003 mRNA_4636: 13004 - BLAST fungal specific transcription protein, putative [Rhiz..., at 660,911 to 661,323 13004

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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659,544 + -1.0
659,958 + 13003 mRNA_4635 0.36 -1.6
659,990 + 13003 mRNA_4635 0.39 +1.0
660,247 - 13003 mRNA_4635 0.60 -0.9
660,379 + 13003 mRNA_4635 0.70 +0.4
660,390 - 13003 mRNA_4635 0.71 +1.1
660,395 + 13003 mRNA_4635 0.72 -0.7
660,553 - 13003 mRNA_4635 0.84 +0.2
660,555 - 13003 mRNA_4635 0.85 +0.1
660,706 + -0.0
660,834 + +1.9
660,858 + +1.7
660,860 - -0.2
660,868 + -0.2
661,148 - 13004 mRNA_4636 0.57 +2.5
661,164 - 13004 mRNA_4636 0.61 +0.0
661,167 + 13004 mRNA_4636 0.62 +0.9
661,170 + 13004 mRNA_4636 0.63 -0.1
661,297 - -0.4
661,713 - +1.0
661,728 - -0.6
661,729 - +0.6

Or see this region's nucleotide sequence