Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4656

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13023 and 13024 are separated by 257 nucleotides13024 and 13025 are separated by 345 nucleotides mRNA_4655: 13023 - K03124 TFIIB, GTF2B, SUA7, tfb transcription initiation factor TFIIB, at 700,768 to 702,328 13023 mRNA_4656: 13024 - Hypothetical Protein, at 702,586 to 704,357 13024 mRNA_4657: 13025 - Hypothetical Protein, at 704,703 to 705,380 13025

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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702,336 + -0.4
702,359 + +0.4
702,523 + -0.1
702,565 + +0.2
702,674 - +0.2
702,820 - 13024 mRNA_4656 0.13 +0.9
702,927 - 13024 mRNA_4656 0.19 -0.8
702,936 + 13024 mRNA_4656 0.20 +1.1
703,098 - 13024 mRNA_4656 0.29 -0.2
703,257 + 13024 mRNA_4656 0.38 -0.1
703,814 + 13024 mRNA_4656 0.69 -1.0
703,958 + 13024 mRNA_4656 0.77 +0.6
703,960 + 13024 mRNA_4656 0.78 +2.8
704,411 - +0.7
704,422 - +1.5
704,548 - -0.8
704,559 - -1.2
704,562 + -0.5
704,569 - +0.2
704,580 + +0.8
704,848 + 13025 mRNA_4657 0.21 -0.9
705,128 - 13025 mRNA_4657 0.63 -1.8
705,134 + 13025 mRNA_4657 0.64 -2.2
705,148 - 13025 mRNA_4657 0.66 -2.0
705,160 + 13025 mRNA_4657 0.67 -0.4

Or see this region's nucleotide sequence