Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4663

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13030 and 13031 are separated by 723 nucleotides13031 and 13032 are separated by 326 nucleotides mRNA_4662: 13030 - K20352 TMED10, ERV25 p24 family protein delta-1, at 720,674 to 721,650 13030 mRNA_4663: 13031 - K18619 CORO7 coronin-7, at 722,374 to 726,218 13031 mRNA_4664: 13032 - Hypothetical Protein, at 726,545 to 727,733 13032

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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721,562 - +0.5
721,600 - +1.8
721,907 + +1.2
722,039 + +0.1
722,039 - +0.2
722,180 - +0.2
722,182 - -0.5
722,217 - +0.2
722,314 - +0.6
722,631 + +1.2
722,929 + 13031 mRNA_4663 0.14 -0.3
723,475 + 13031 mRNA_4663 0.29 +0.4
723,790 - 13031 mRNA_4663 0.37 -0.1
724,254 + 13031 mRNA_4663 0.49 -0.1
724,334 + 13031 mRNA_4663 0.51 -0.3
724,407 - 13031 mRNA_4663 0.53 +0.1
724,787 + 13031 mRNA_4663 0.63 -1.4
725,032 + 13031 mRNA_4663 0.69 -1.2
725,383 + 13031 mRNA_4663 0.78 -0.5
726,504 + +0.8
726,557 + +0.2
726,827 - 13032 mRNA_4664 0.24 -0.4
726,850 - 13032 mRNA_4664 0.26 +0.8
726,874 + 13032 mRNA_4664 0.28 +0.3

Or see this region's nucleotide sequence