Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4675

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13042 and 13043 are separated by 191 nucleotides13043 and 13044 are separated by 360 nucleotides mRNA_4674: 13042 - K08150 SLC2A13, ITR MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13, at 745,872 to 747,839 13042 mRNA_4675: 13043 - SUPERFAMILY--SSF53448, at 748,031 to 749,259 13043 mRNA_4676: 13044 - K01101 E3.1.3.41 4-nitrophenyl phosphatase, at 749,620 to 750,873 13044

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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747,233 - 13042 mRNA_4674 0.69 +0.9
747,384 + 13042 mRNA_4674 0.77 -0.2
747,499 + 13042 mRNA_4674 0.83 -0.2
747,684 + +0.3
747,815 + -1.0
747,839 + +1.1
749,560 - -0.4
749,561 - +1.5
750,131 + 13044 mRNA_4676 0.41 -0.4

Or see this region's nucleotide sequence