Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4691

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13058 and 13059 are separated by 275 nucleotides13059 and 13060 are separated by 276 nucleotides mRNA_4690: 13058 - HMMPfam-Heterokaryon incompatibility protein Het-C-PF07217, at 783,339 to 787,092 13058 mRNA_4691: 13059 - Hypothetical Protein, at 787,368 to 788,152 13059 mRNA_4692: 13060 - K00559 E2.1.1.41, SMT1, ERG6 sterol 24-C-methyltransferase, at 788,429 to 789,828 13060

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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786,530 - 13058 mRNA_4690 0.85 -0.1
786,824 + +2.3
786,942 - -0.6
786,963 + +0.6
786,971 - -1.0
786,979 - -0.6
786,983 + +0.6
786,996 - -0.8
786,996 - -1.1
787,129 - +0.4
787,132 + -0.0
787,136 - +0.0
787,137 - +0.3
787,149 - +0.5
787,154 + -0.4
787,160 + -0.8
787,175 - +0.4
787,267 - -0.1
787,274 - -0.9
787,274 - -0.9
787,277 + +0.7
787,279 + +0.8
787,282 - +2.0
787,300 - -1.0
787,300 - -1.0
787,328 + +0.3
787,337 - -0.3
787,463 + 13059 mRNA_4691 0.12 -0.1
787,586 + 13059 mRNA_4691 0.28 +1.3
787,603 + 13059 mRNA_4691 0.30 -0.1
787,606 + 13059 mRNA_4691 0.30 +1.1
788,025 - 13059 mRNA_4691 0.84 +0.8
788,142 - +0.9
788,143 + +0.3
788,186 + -0.4
788,188 - +1.4
788,197 - +0.4
788,203 - -1.4
788,203 + -0.6
788,209 - -0.1
788,212 + +1.5
788,212 - -0.1
788,213 - +0.3
788,217 - +1.2
788,222 + +0.3
788,224 + -0.4

Or see this region's nucleotide sequence