Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4744

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13112 and 13113 are separated by 525 nucleotides mRNA_4744: 13112 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 906,003 to 908,213 13112 mRNA_4745: 13113 - K17086 TM9SF2_4 transmembrane 9 superfamily member 2/4, at 908,739 to 911,438 13113

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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905,131 + +1.9
905,212 - +0.4
905,451 + -0.3
905,468 - -0.9
905,469 - -0.3
905,627 - -0.8
905,631 + +1.1
905,631 - +0.6
905,748 + +2.1
905,794 + -0.1
905,801 + +0.7
905,851 - +1.0
905,856 - +0.7
905,865 + +0.6
905,869 - -1.3
905,870 - -0.6
905,883 - +0.2
905,896 - -1.0
905,903 - +1.2
905,917 + +0.8
905,922 - +0.4
905,930 + +0.0
905,949 - +0.8
905,951 + +2.1
905,964 - -0.7
905,964 + +2.6
905,965 + +0.4
905,966 - -0.5
905,970 - -0.0
905,978 - +1.8
906,149 - +0.5
906,228 - 13112 mRNA_4744 0.10 +0.4
906,234 + 13112 mRNA_4744 0.10 -1.4
906,366 - 13112 mRNA_4744 0.16 +0.4
906,541 + 13112 mRNA_4744 0.24 +0.5
906,577 + 13112 mRNA_4744 0.26 -0.9
906,654 - 13112 mRNA_4744 0.29 +0.0
906,972 + 13112 mRNA_4744 0.44 -3.5
907,275 + 13112 mRNA_4744 0.58 +0.0
907,296 - 13112 mRNA_4744 0.58 +0.8
907,439 - 13112 mRNA_4744 0.65 +1.7
907,514 + 13112 mRNA_4744 0.68 +0.2
907,735 + 13112 mRNA_4744 0.78 +0.7
907,773 - 13112 mRNA_4744 0.80 -1.6
907,807 - 13112 mRNA_4744 0.82 +0.7
907,816 + 13112 mRNA_4744 0.82 -0.3
907,949 + 13112 mRNA_4744 0.88 -0.1
908,191 - +0.8
908,288 + +1.1
908,444 + +0.3
908,605 + +0.4
908,674 + +1.6
908,682 - +0.8
908,827 + +0.5
908,963 + -1.4
909,068 + 13113 mRNA_4745 0.12 +1.0
909,151 - 13113 mRNA_4745 0.15 +1.8

Or see this region's nucleotide sequence