Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4757

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13124 and 13125 are separated by 416 nucleotides13125 and 13126 are separated by 273 nucleotides mRNA_4756: 13124 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 935,432 to 936,982 13124 mRNA_4757: 13125 - Hypothetical Protein, at 937,399 to 937,793 13125 mRNA_4758: 13126 - HMMPfam-Autophagy-related protein 27-PF09451,SUPERFAMILY--SSF50911, at 938,067 to 939,280 13126

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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936,534 - 13124 mRNA_4756 0.71 -0.0
936,845 + +0.1
937,028 - +0.7
937,144 + -0.3
937,218 - -1.8
937,242 - +1.0
937,534 - 13125 mRNA_4757 0.34 -1.4
937,538 + 13125 mRNA_4757 0.35 +0.2
937,549 - 13125 mRNA_4757 0.38 +1.0
937,550 + 13125 mRNA_4757 0.38 +0.3
937,632 - 13125 mRNA_4757 0.59 +0.6
937,689 - 13125 mRNA_4757 0.73 -0.2
937,704 + 13125 mRNA_4757 0.77 -0.5
937,712 + 13125 mRNA_4757 0.79 +0.7
937,729 + 13125 mRNA_4757 0.84 +2.6
937,729 + 13125 mRNA_4757 0.84 -0.3
937,736 - 13125 mRNA_4757 0.85 +1.2
937,746 + 13125 mRNA_4757 0.88 +1.5
937,765 - +2.2
937,768 - -0.6
937,873 - +0.3
937,892 - +0.2
937,897 + -0.5
937,908 + -1.0
937,910 + -0.8
937,918 + +0.6
938,179 + +0.2
938,200 - 13126 mRNA_4758 0.11 -1.0
938,207 + 13126 mRNA_4758 0.12 +0.5
938,297 - 13126 mRNA_4758 0.19 +0.3
938,365 + 13126 mRNA_4758 0.25 +0.3
938,487 - 13126 mRNA_4758 0.35 +0.3
938,694 + 13126 mRNA_4758 0.52 +1.0

Or see this region's nucleotide sequence