Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4852

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13219 and 13220 are separated by 156 nucleotides13220 and 13221 are separated by 261 nucleotides mRNA_4851: 13219 - K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1, at 1,146,547 to 1,149,479 13219 mRNA_4852: 13220 - Hypothetical Protein, at 1,149,636 to 1,152,739 13220 mRNA_4853: 13221 - Hypothetical Protein, at 1,153,001 to 1,154,455 13221

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
1,148,743 - 13219 mRNA_4851 0.75 +1.1
1,149,121 - 13219 mRNA_4851 0.88 +0.1
1,149,121 - 13219 mRNA_4851 0.88 -0.6
1,149,153 - 13219 mRNA_4851 0.89 +0.2
1,149,266 + +0.6
1,149,274 - -0.4
1,149,283 - +1.8
1,149,426 + +0.4
1,149,427 - -0.7
1,149,476 + +0.2
1,149,560 - +0.5
1,149,560 - +0.3
1,149,570 - +2.0
1,149,599 + +1.4
1,149,694 + -0.8
1,149,717 - +0.8
1,149,718 + +0.9
1,149,760 - -0.3
1,150,034 + 13220 mRNA_4852 0.13 +0.1
1,150,158 + 13220 mRNA_4852 0.17 -0.5
1,150,164 - 13220 mRNA_4852 0.17 -0.3
1,150,326 + 13220 mRNA_4852 0.22 +0.8
1,150,345 - 13220 mRNA_4852 0.23 -0.2
1,150,438 - 13220 mRNA_4852 0.26 +0.7
1,150,460 + 13220 mRNA_4852 0.27 -1.0
1,150,469 - 13220 mRNA_4852 0.27 +0.6
1,150,610 - 13220 mRNA_4852 0.31 -1.1
1,150,946 + 13220 mRNA_4852 0.42 +0.1
1,151,187 - 13220 mRNA_4852 0.50 -0.1
1,151,324 - 13220 mRNA_4852 0.54 -0.2
1,151,459 + 13220 mRNA_4852 0.59 +0.6
1,151,462 - 13220 mRNA_4852 0.59 -1.0
1,151,727 + 13220 mRNA_4852 0.67 +1.5
1,151,880 + 13220 mRNA_4852 0.72 -2.3
1,152,634 - +0.7
1,152,757 - +0.3
1,152,766 + -0.2
1,153,048 + -0.5
1,153,077 + +0.0
1,153,140 + -2.8
1,153,205 + 13221 mRNA_4853 0.14 -0.0
1,153,274 - 13221 mRNA_4853 0.19 -1.6
1,153,457 - 13221 mRNA_4853 0.31 -1.1

Or see this region's nucleotide sequence