Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4861

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13228 and 13229 are separated by 327 nucleotides13229 and 13230 are separated by 112 nucleotides mRNA_4860: 13228 - K13237 DECR2 peroxisomal 2,4-dienoyl-CoA reductase, at 1,164,128 to 1,165,413 13228 mRNA_4861: 13229 - BLAST NADH-ubiquinone oxidoreductase [Sanghuangporus baumii], at 1,165,741 to 1,167,081 13229 mRNA_4862: 13230 - K00817 hisC histidinol-phosphate aminotransferase, at 1,167,194 to 1,168,610 13230

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,165,238 + 13228 mRNA_4860 0.86 +0.2
1,165,248 - 13228 mRNA_4860 0.87 +1.0
1,165,250 + 13228 mRNA_4860 0.87 +0.6
1,165,366 + +1.0
1,165,368 + -0.2
1,165,386 - +0.8
1,165,527 - -0.8
1,165,536 - +1.7
1,165,683 - +0.9
1,165,700 - -0.0
1,165,705 + -0.6
1,165,844 + +1.3
1,165,848 + -0.6
1,165,971 - 13229 mRNA_4861 0.17 +1.3
1,165,997 - 13229 mRNA_4861 0.19 +0.1
1,166,132 + 13229 mRNA_4861 0.29 -0.0

Or see this region's nucleotide sequence