Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4889

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13256 and 13257 are separated by 87 nucleotides13257 and 13258 are separated by 347 nucleotides mRNA_4888: 13256 - K20044 PICALM phosphatidylinositol-binding clathrin assembly protein, at 1,224,614 to 1,227,335 13256 mRNA_4889: 13257 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,227,423 to 1,230,111 13257 mRNA_4890: 13258 - HMMPfam-SH3 domain-PF00018,HMMPfam-Cortical protein marker for cell polarity-PF12768,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF69322, at 1,230,459 to 1,234,781 13258

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,226,433 - 13256 mRNA_4888 0.67 +0.1
1,226,763 - 13256 mRNA_4888 0.79 -1.2
1,227,086 - +0.1
1,227,355 + -1.3
1,227,365 + +0.4
1,227,538 - -1.3
1,227,633 + -0.6
1,227,649 - -2.0
1,227,660 + +0.5
1,227,671 + -0.7
1,227,824 + 13257 mRNA_4889 0.15 +1.9
1,227,830 - 13257 mRNA_4889 0.15 +0.5
1,227,839 - 13257 mRNA_4889 0.15 -0.9
1,228,231 + 13257 mRNA_4889 0.30 -0.6
1,228,386 - 13257 mRNA_4889 0.36 +1.3
1,228,730 - 13257 mRNA_4889 0.49 -0.3
1,229,286 + 13257 mRNA_4889 0.69 -0.6
1,229,471 - 13257 mRNA_4889 0.76 -1.8
1,229,970 - +0.1
1,230,018 - +0.9
1,230,157 - +1.2
1,230,160 - +1.4
1,230,168 + +0.3
1,230,168 + -0.3
1,230,187 + +0.4
1,230,190 - +0.7
1,230,462 - +0.7
1,230,641 - +0.2
1,230,655 + +0.2

Or see this region's nucleotide sequence