Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4893

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13260 and 13261 are separated by 82 nucleotides13261 and 13262 are separated by 172 nucleotides mRNA_4892: 13260 - K00915 IPMK, IPK2 inositol-polyphosphate multikinase, at 1,237,907 to 1,239,157 13260 mRNA_4893: 13261 - Hypothetical Protein, at 1,239,240 to 1,240,302 13261 mRNA_4894: 13262 - K11187 PRDX5 peroxiredoxin 5, atypical 2-Cys peroxiredoxin, at 1,240,475 to 1,241,393 13262

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,239,168 - +0.5
1,239,180 - +0.3
1,239,197 + +0.8
1,239,916 - 13261 mRNA_4893 0.64 +1.9
1,240,333 - +0.3
1,240,629 + 13262 mRNA_4894 0.17 +2.3
1,240,794 + 13262 mRNA_4894 0.35 +2.3
1,241,074 + 13262 mRNA_4894 0.65 +0.3
1,241,177 - 13262 mRNA_4894 0.76 -0.3
1,241,198 + 13262 mRNA_4894 0.79 +2.3
1,241,222 + 13262 mRNA_4894 0.81 -0.9
1,241,226 + 13262 mRNA_4894 0.82 -1.4
1,241,226 + 13262 mRNA_4894 0.82 -1.2
1,241,238 - 13262 mRNA_4894 0.83 +1.4
1,241,244 - 13262 mRNA_4894 0.84 -0.2

Or see this region's nucleotide sequence