Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4906

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13273 and 13274 are separated by 58 nucleotides13274 and 13275 are separated by 288 nucleotides13275 and 13276 are separated by 281 nucleotides mRNA_4905: 13273 - KOG2371 Molybdopterin biosynthesis protein, at 1,271,158 to 1,273,410 13273 mRNA_4906: 13274 - K03540 RPR2, RPP21 ribonuclease P protein subunit RPR2, at 1,273,469 to 1,274,303 13274 mRNA_4907: 13275 - HMMPfam-Cytochrome c oxidase subunit VIIc-PF02935,SUPERFAMILY--SSF81427, at 1,274,592 to 1,274,946 13275 mRNA_4908: 13276 - K15163 SRB8, MED12 mediator of RNA polymerase II transcription subunit 12, fungi type, at 1,275,228 to 1,281,484 13276

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,272,688 + 13273 mRNA_4905 0.68 +0.2
1,272,691 - 13273 mRNA_4905 0.68 -0.5
1,272,768 - 13273 mRNA_4905 0.71 -0.3
1,273,079 + 13273 mRNA_4905 0.85 +0.8
1,273,499 - -0.2
1,274,371 + +0.2
1,274,392 + -1.0
1,274,521 + +1.5
1,274,525 + +1.1
1,274,853 + 13275 mRNA_4907 0.74 +0.1
1,275,160 + +1.1

Or see this region's nucleotide sequence