Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4916

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13283 and 13284 are separated by 181 nucleotides13284 and 13285 are separated by 311 nucleotides mRNA_4915: 13283 - HMMPfam-Complex1_LYR-like-PF13233, at 1,297,667 to 1,298,264 13283 mRNA_4916: 13284 - Hypothetical Protein, at 1,298,446 to 1,299,767 13284 mRNA_4917: 13285 - KOG2920 Predicted methyltransferase, at 1,300,079 to 1,301,093 13285

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,297,595 - +0.3
1,297,598 + +2.4
1,297,605 - -0.1
1,297,606 - +1.9
1,297,626 + +0.2
1,297,641 - +0.3
1,298,067 + 13283 mRNA_4915 0.67 +0.8
1,298,329 - -2.3
1,298,332 - +1.5
1,298,341 + -0.0
1,298,353 - +1.5
1,298,914 + 13284 mRNA_4916 0.35 +0.4
1,298,918 - 13284 mRNA_4916 0.36 +0.5
1,298,921 - 13284 mRNA_4916 0.36 -1.6
1,299,258 + 13284 mRNA_4916 0.61 +0.8
1,299,386 + 13284 mRNA_4916 0.71 +0.6
1,299,793 - +0.5
1,299,799 - -0.7
1,299,973 - -0.0
1,300,071 + +0.6
1,300,119 + +0.2
1,300,262 - 13285 mRNA_4917 0.18 +2.2
1,300,696 + 13285 mRNA_4917 0.61 +0.5

Or see this region's nucleotide sequence