Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4920

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13287 and 13288 are separated by 749 nucleotides13288 and 13289 are separated by 507 nucleotides mRNA_4919: 13287 - K01768 E4.6.1.1 adenylate cyclase, at 1,304,232 to 1,310,691 13287 mRNA_4920: 13288 - K01807 rpiA ribose 5-phosphate isomerase A, at 1,311,441 to 1,312,877 13288 mRNA_4921: 13289 - K12156 CYP83A1 cytochrome P450, family 83, subfamily A, polypeptide 1, at 1,313,385 to 1,315,387 13289

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,310,462 + +0.8
1,310,557 - -0.9
1,310,726 - +1.0
1,310,733 - +1.5
1,310,735 - +0.7
1,310,747 - +1.2
1,310,750 - +0.5
1,310,876 + +2.1
1,310,882 - -0.6
1,310,884 + +1.2
1,311,007 + +0.5
1,311,028 + +0.7
1,311,045 - -0.1
1,311,049 + -0.1
1,311,167 + -1.0
1,311,268 - -0.3
1,311,293 - +0.6
1,311,307 - -0.2
1,311,310 - -1.1
1,311,319 - +0.2
1,311,323 + -0.9
1,312,895 - +0.8
1,312,904 + -1.0
1,313,048 + +1.5
1,313,050 + -1.6
1,313,052 - -0.4
1,313,058 - -1.6
1,313,086 + +0.3
1,313,093 + -0.0
1,313,098 + +0.8
1,313,149 - -0.7
1,313,245 - +0.0
1,313,374 + +0.4
1,313,374 + +0.8
1,313,509 - +1.0
1,313,663 - 13289 mRNA_4921 0.14 -0.4
1,313,833 + 13289 mRNA_4921 0.22 +1.4

Or see this region's nucleotide sequence