Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4947

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13314 and 13315 are separated by 124 nucleotides13315 and 13316 are separated by 201 nucleotides mRNA_4946: 13314 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,378,791 to 1,380,023 13314 mRNA_4947: 13315 - K12584 DCPS, DCS m7GpppX diphosphatase, at 1,380,148 to 1,381,498 13315 mRNA_4948: 13316 - Hypothetical Protein, at 1,381,700 to 1,382,968 13316

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,379,369 - 13314 mRNA_4946 0.47 +0.4
1,379,384 + 13314 mRNA_4946 0.48 -1.4
1,379,503 + 13314 mRNA_4946 0.58 -0.7
1,379,832 - 13314 mRNA_4946 0.84 +0.5
1,379,929 - +0.4
1,379,950 + +0.5
1,379,959 + +0.4
1,380,114 + +1.0
1,380,250 - +0.2
1,380,264 + +0.2
1,380,270 + -0.3
1,380,394 - 13315 mRNA_4947 0.18 +0.6
1,380,412 - 13315 mRNA_4947 0.20 -0.8
1,380,420 - 13315 mRNA_4947 0.20 +0.6
1,380,536 - 13315 mRNA_4947 0.29 +0.5
1,380,538 + 13315 mRNA_4947 0.29 +0.3
1,380,838 - 13315 mRNA_4947 0.51 +0.4
1,380,978 + 13315 mRNA_4947 0.61 +0.1
1,381,450 - -0.4
1,381,453 + -0.2
1,381,570 - -1.8
1,381,731 - +1.3
1,382,031 + 13316 mRNA_4948 0.26 +0.4
1,382,147 + 13316 mRNA_4948 0.35 +0.9
1,382,180 + 13316 mRNA_4948 0.38 +0.4
1,382,409 - 13316 mRNA_4948 0.56 +1.3

Or see this region's nucleotide sequence