Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5093

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13460 and 13461 are separated by 468 nucleotides13461 and 13462 are separated by 474 nucleotides mRNA_5092: 13460 - HMMPfam-RTA1 like protein-PF04479, at 1,730,393 to 1,731,831 13460 mRNA_5093: 13461 - Hypothetical Protein, at 1,732,300 to 1,732,990 13461 mRNA_5094: 13462 - K10259 MET30 F-box and WD-40 domain protein MET30, at 1,733,465 to 1,736,154 13462

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
1,731,518 - 13460 mRNA_5092 0.78 -0.1
1,731,520 - 13460 mRNA_5092 0.78 -0.2
1,731,526 + 13460 mRNA_5092 0.79 -0.2
1,731,677 - 13460 mRNA_5092 0.89 -0.3
1,731,694 + +0.4
1,731,831 - +1.1
1,731,845 - -0.0
1,731,848 + -2.0
1,731,851 + -0.0
1,731,853 - +0.1
1,731,862 + +1.5
1,731,938 - +0.1
1,731,979 - +0.7
1,731,986 + -0.4
1,731,987 + +0.7
1,731,987 + +0.0
1,731,990 - -1.2
1,731,997 - -0.6
1,732,016 - -0.4
1,732,017 + +0.1
1,732,120 - +0.6
1,732,125 + -0.4
1,732,129 - -0.1
1,732,142 + +1.3
1,732,149 - -2.5
1,732,149 + +0.1
1,732,152 + +1.3
1,732,161 - +0.3
1,732,271 - -1.4
1,732,274 - -0.3
1,732,293 + -0.2
1,732,580 + 13461 mRNA_5093 0.41 -0.1
1,732,729 + 13461 mRNA_5093 0.62 -0.9
1,732,894 + 13461 mRNA_5093 0.86 +1.9
1,732,998 + +1.8
1,733,111 - +1.4
1,733,132 - -0.6
1,733,150 - -0.5
1,733,155 + +0.4
1,733,162 - +0.3
1,733,167 + +0.7
1,733,274 - +0.0
1,733,275 - +0.6
1,733,276 + +0.0
1,733,282 - +0.7
1,733,301 - +0.2
1,733,323 + +0.7
1,733,425 - -0.0
1,733,428 - +1.6
1,733,438 + +0.7
1,733,440 + +0.1
1,733,453 + +1.2
1,733,453 + +0.8

Or see this region's nucleotide sequence